The Mizoram Presbyterian Church is one of the constituent bodies of the General Assembly of the Presbyterian Church of India, which has its headquarters at Shillong in Meghalaya manned by three Administrative Secretaries.
The administrative set up of the Mizoram Presbyterian Church Synod is highly centralized. The Synod, having its headquarters at Aizawl, the capital of Mizoram State, is the highest decision making body of the Church.